GgaEX0023790 @ galGal3
Exon Skipping
Gene
ENSGALG00000016144 | F1NY88_CHICK
Description
NA
Coordinates
chr1:112390400-112392190:-
Coord C1 exon
chr1:112392048-112392190
Coord A exon
chr1:112391059-112391211
Coord C2 exon
chr1:112390400-112390884
Length
153 bp
Sequences
Splice sites
3' ss Seq
TGCACCAATATTTTGTGCAGGGT
3' ss Score
4.8
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
GTAAAACAGCAAATGACTTGAATTATGTCATGGTACCCTTAATAGAACGTTCTACATGTAATTCTGTCTATGTCTACGATGGCATGGTCTTGCCTACAATGGTCTGTGCTGGATATTTACAAGGAGGAATTGATTCTTGTCAG
Seq A exon
GGTGACAGCGGAGGTCCTCTGGTAACAAACAAAAACTCTGTGTGGTGGTTGGTTGGAGATACCAGCTGGGGAACTGGCTGCGCTAGTCCCAATAGGCCTGGAGTTTATGGAAATATGACTGTGTTTACAGACTGGATTTATAAAAATATGCAG
Seq C2 exon
GCCAACAGATGACAACGCCATTTCTCATTCCGTGTTTCTGAGAACAAGAGAAAATGAAGCCATGGGTGCCTGGGATATTTATTCACTTTTACAAATGATTTTGCTCTTTGAATTTTTTTTTTTTTTTTAAATAACATGAAGGATTGCACACTGGATTACGTGCTGACTACAGTGACTGATTTTGGTCAGTGAGAGATTAGCACAATAGGCACCTTTATTGATGGGGTGCCTGGCAGAAAGGTGTTCTGCTAACTGCTTGCTGAGATTTTTTTTTTTTTTTAGCTGAGTAACTTTCACTTGGTAATCAGGTGCAGGTTTAACATGGAAATCTTAATCACAACTTCCGATTTTTGTAGCAGGATGCTGAGACAGTTGGTTTTGTAGGGTTTTAAATTAACTGTTAAGTAATGTGAGCATTGAATCTCTGAGCTGCTGGTTGGCAATGTAAGAAGAAATGAATGTTTTCTGGTATATATGAAGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016144-'14-15,'14-13,16-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.5=100)
A:
PF0008921=Trypsin=PD(19.7=88.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTACGATGGCATGGTCTTGC
R:
CAGTCACTGTAGTCAGCACGT
Band lengths:
249-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]