BtaEX6003715 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009132 | TMPRSS2
Description
Bos taurus transmembrane protease, serine 2 (TMPRSS2), mRNA. [Source:RefSeq mRNA;Acc:NM_001081585]
Coordinates
chr1:143211539-143214643:-
Coord C1 exon
chr1:143214501-143214643
Coord A exon
chr1:143214155-143214307
Coord C2 exon
chr1:143211539-143212398
Length
153 bp
Sequences
Splice sites
3' ss Seq
TAACCTGCTGTGTCCCCCAGGGT
3' ss Score
9.48
5' ss Seq
AGGGTAACC
5' ss Score
5.4
Exon sequences
Seq C1 exon
GGAAGACCTCAGATGACCTGAACGCGGCCAAGGTGCACCTCATTGAGCCCCGGAAGTGCAACAGCAAGTACATGTATGACAACCTCATCACGCCCGCCATGATCTGTGCAGGCTACCTGCGGGGCACCGTCGACTCCTGCCAG
Seq A exon
GGTGACAGTGGAGGTCCTCTGGTCACACTGAAGAGCAGTGTCTGGTGGCTGATTGGAGACACGAGCTGGGGGTCAGGCTGTGCCAAGGCGTACCGACCGGGAGTGTACGGGAACGTGACAGTGTTCACAGACTGGATCTATCAACAAATGAGG
Seq C2 exon
GCAAACAGCTAATCTGTATGGCCTGGGTCCTTGACAACATTGCACAAGAAAAAGAAGGGGCTGATTGTTAATCCCCACGCATTATGTATTTTTTGAAGTGATTCCAGGTCCTTTTGTTTTTATGCGATCATGATCCTGTATGTCTTGGCCCTTTCCACAGTTCTGTGCAGACCCCGTGGCTCCCCTACCCCCGGGCCCACCCTTCCAGACCCCTCATCTGACCGGGGAGGCTGGCTGGCCATGGACAGCAGAGCCAGCGCAGAGCAAGGGGACGGGGTCTGCCCCGCGGGGACCTCCCCTCTGAGTCCCACTGCAGGGACTCCTCGGATTCACAGGGGGCTGGCGACTTCTCAGCTGCTGGACGGCTTGAGAAAGGAAGGCGAAAAGCCTGGCAGAACCTGCAGGGGCCAGCCTCTGGGGCCACTGCTGGTGAGACCACTTAGGGTAGCCCCAGGGCCTGTCTCTCCACGAGGGAATTTGATGAACATTCTTGAGTGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009132-'11-16,'11-15,12-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.5=100)
A:
PF0008921=Trypsin=PD(19.7=88.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGAAGTGCAACAGCAAGTA
R:
AACTGTGGAAAGGGCCAAGAC
Band lengths:
256-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]