MmuEX0048169 @ mm10
Exon Skipping
Gene
ENSMUSG00000000385 | Tmprss2
Description
transmembrane protease, serine 2 [Source:MGI Symbol;Acc:MGI:1354381]
Coordinates
chr16:97564684-97567738:-
Coord C1 exon
chr16:97567596-97567738
Coord A exon
chr16:97567023-97567175
Coord C2 exon
chr16:97564684-97566151
Length
153 bp
Sequences
Splice sites
3' ss Seq
TAACTTGCTGTGTTCCCCAGGGA
3' ss Score
9.14
5' ss Seq
AGGGTAATT
5' ss Score
6.62
Exon sequences
Seq C1 exon
GGAAGACCTCGGACGTGTTGAATGCTGCCATGGTACCCTTGATCGAGCCCTCCAAATGTAATAGTAAATACATATACAACAACCTAATCACACCAGCCATGATCTGTGCCGGCTTCCTCCAGGGGTCTGTCGACTCTTGCCAG
Seq A exon
GGAGACAGTGGAGGGCCGCTGGTTACTTTGAAGAATGGGATCTGGTGGCTGATTGGGGACACGAGCTGGGGCTCGGGCTGTGCCAAGGCACTCAGACCTGGAGTATACGGGAACGTGACGGTATTTACAGATTGGATCTACCAGCAAATGAGG
Seq C2 exon
GCGAACAGCTAATCCACGTGGCTTTGTCCCAGACTTCCTTTGTCTTCAACAACCTTCTGCAAGAAAACCAAGGGCCTGAATTTTAACTTCCTGTGCACAATGTACCTTTTGAGATGATTCGAAGGGCCTTTCACTTTTATTAAACAGTGACTTGTTTGACTGTGCTCCCTGGTCCTGTGAGGGCTTCAGTGCCCCACCCCTGGGCCACTTCTGCAGCTCCCACCAGAATGGATGACCAGATTCTGTTGGGTTTGGGCACATAGGGCCAAAGGCAGAGGAGGGTGGCACTCTCATGTTGGAACTTCTTTTGGGCTCATGCTCAGGCCTTTTTTGGATCACTAAGGACTATGACCTCTGAGTAACCTGATGACCTGAGAAAGAGTAAGGAGGCCAGGCAGGGCCTTGGGCCCAGGAACAGGTACCTTGAGAGTGAGAGCTACCCATTGCCTGTGGCCTAAATCTGCTGTGCAGGTTGGGCTGGTCATACTGTCATGATTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000385_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.5=100)
A:
PF0008921=Trypsin=PD(19.7=88.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGCTGCCATGGTACCCTTG
R:
AGTGAAAGGCCCTTCGAATCA
Band lengths:
258-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types