DreEX6089424 @ danRer10
Exon Skipping
Gene
ENSDARG00000098686 | tmprss2
Description
transmembrane protease, serine 2 [Source:ZFIN;Acc:ZDB-GENE-041212-48]
Coordinates
chr10:38783595-38786259:+
Coord C1 exon
chr10:38783595-38783737
Coord A exon
chr10:38784272-38784424
Coord C2 exon
chr10:38785770-38786259
Length
153 bp
Sequences
Splice sites
3' ss Seq
AAGAGTGTTTTTGCTCACAGGGG
3' ss Score
5.88
5' ss Seq
CGGGTGAGA
5' ss Score
7.62
Exon sequences
Seq C1 exon
GCTCTTCCTCAGCAACCCTACAAGAGGCCAAAATCCAGCTGATCGACAGCACGATTTGTAACAGCCGGCCTGTGTATAACGGACTGATCACCGACACCATGATCTGTGCTGGAAAGCTGGCAGGCGGCGTGGACTCCTGTCAG
Seq A exon
GGGGACAGCGGTGGTCCTCTGGTCACCAATGTGCGCTCTCTCTGGTGGCTGCTGGGAGACACGAGCTGGGGTGATGGATGCGCTGTCAGAAACAAACCCGGAGTCTACGGAAATGTGACCTACTTCCTTGACTGGATCTACCAGCAAATGCGG
Seq C2 exon
AAATATTAGCCTTTTGAATATAAGAGAAGAGCAGATGCCTCAAGAAAATGGCGTGTACAGGACTGTTGACTTGACCTTGGTCTTGGTGATTTTACTCTGTATTTTAATGTAAATGTTTTCATATGAATCTACGAGCTATTTATTTGCACCAGTGCCATAAATAAAGAGAATGGCACAGTATACTACAATTTGCACTTTTTTATTTTCTTAAAAGTATGTTTTGTGTATAAGAACTAATGAAAAAATGTAAAAGTGTGTACCTGATGATGGAGTTTTGTCCCTGATATATTCATGTTTTCTAATTTCAGTGGAGATTTACATTATTACAGTATTCGACATCAACAGTGAAACAGTGCATTTATTTTACAACTATTTACACAAGTTCTTTTGTTTGTAAATTGAATGAAAGTGAATATTTTTGGTCTTCTGACTGAATGTCATTTTTGTGCGTTTGTTAAATCATTTTTTACACATTAAATGATTTTTTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098686-'16-15,'16-14,17-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.6=100)
A:
PF0008921=Trypsin=PD(19.7=88.2)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCACGATTTGTAACAGCCG
R:
CACTGGTGCAAATAAATAGCTCGT
Band lengths:
251-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]