BtaEX6004230 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011495 | DIP2A
Description
DIP2 disco-interacting protein 2 homolog A (Drosophila) [Source:HGNC Symbol;Acc:HGNC:17217]
Coordinates
chr1:147965491-147967919:+
Coord C1 exon
chr1:147965491-147965600
Coord A exon
chr1:147965960-147966090
Coord C2 exon
chr1:147967751-147967919
Length
131 bp
Sequences
Splice sites
3' ss Seq
GTGGGCTTTTACTCCTTCAGATG
3' ss Score
8.61
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
ATGACATACCCAAGAAGAAGGTGGCCAGCGTCTTCAGGCCCCCGTCCCCGGATGTGCTCGCGTACCTGGACTTCAGCGTGTCAACGACCGGGATCCTGGCGGGTGTGAAG
Seq A exon
ATGTCGCATGCGGCCACCAGCGCCCTGTGCCGCTCCATCAAGCTGCAGTGTGAGCTGTACCCCTCCAGGCAGATCGCCATCTGCCTCGACCCCTACTGTGGCCTCGGCTTCGCCCTGTGGTGTCTGTGCAG
Seq C2 exon
CGTCTACTCTGGACACCAGTCGGTACTGGTGCCCCCGCCGGAGCTGGAGACCAACGTGTCCCTGTGGCTGTGGGCCGTCAGCCAGTACAAGGCGCGCGTCACGTTCTGCTCCTACTCGGTGATGGAGATGTGTGCCCGGGGCCTGGGTGCGCAGACAGCGGCACTCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011495-'33-42,'33-41,34-42=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(7.6=100)
A:
PF0050123=AMP-binding=FE(9.1=100)
C2:
PF0050123=AMP-binding=FE(11.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCCAAGAAGAAGGTGGCCA
R:
CGGGCACACATCTCCATCAC
Band lengths:
242-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]