GgaEX0008886 @ galGal3
Exon Skipping
Gene
ENSGALG00000006228 | DIP2A
Description
NA
Coordinates
chr7:6911491-6915291:-
Coord C1 exon
chr7:6915182-6915291
Coord A exon
chr7:6914561-6914691
Coord C2 exon
chr7:6911491-6911659
Length
131 bp
Sequences
Splice sites
3' ss Seq
AGTCTGATTTCCTCTTACAGATG
3' ss Score
10
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
ATGATATGCCTAAAAAGAAACTGGCTAATATTTTCAGACCTACATCTCCAGATATGTTGGCATATTTGGACTTCAGCGTGTCAACCACTGGTATATTAGCAGGAGTAAAG
Seq A exon
ATGTCACATGCAGCTACAAGTGCCTTATGTCGCTCTATAAAGCTACAGTGTGAGCTGTACCCTTCACGTCAGATTGCTATCTGCCTTGACCCCTACTGCGGTCTGGGGTTTGCACTGTGGTGCTTGTGCAG
Seq C2 exon
TGTATATTCGGGTCATCAGTCCATTCTTGTCCCTCCTCTGGAGCTGGAGAGCAACGTGTCTCTGTGGCTGTCTGCTGTAAGCCAGTACAAAGTGCGTGTCACTTTCTGTTCTTACTCAGTGATGGAGATGTGCACCAAAGGGCTTGGGACACAGACTGATATGCTCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006228-'44-46,'44-45,45-46
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(7.6=100)
A:
PF0050123=AMP-binding=FE(9.0=100)
C2:
PF0050123=AMP-binding=FE(11.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTACATCTCCAGATATGTTGGC
R:
CCGGAGCATATCAGTCTGTGT
Band lengths:
242-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]