MmuEX6049166 @ mm9
Exon Skipping
Gene
ENSMUSG00000020231 | Dip2a
Description
DIP2 disco-interacting protein 2 homolog A (Drosophila) [Source:MGI Symbol;Acc:MGI:2385920]
Coordinates
chr10:75735780-75737843:-
Coord C1 exon
chr10:75737734-75737843
Coord A exon
chr10:75736894-75737024
Coord C2 exon
chr10:75735780-75735948
Length
131 bp
Sequences
Splice sites
3' ss Seq
CCTTTTCTTCACTCCTACAGATG
3' ss Score
10.92
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
ATGACATTCCAAAAAAGAAGGTGGCTAGCATTTTCAGACCGCCCTCCCCAGACGTGCTCGCGTACTTGGACTTCAGTGTGTCAACGACAGGGATCTTAGCTGGAGTTAAG
Seq A exon
ATGTCGCACGCAGCCACAAGTGCCTTGTGCCGTTCCATAAAGCTTCAGTGTGAGCTGTACCCCTCACGGCAGATCGCCATCTGCCTGGACCCTTACTGTGGCCTCGGGTTTGCACTGTGGTGTCTGTGCAG
Seq C2 exon
CGTCTACTCTGGGCACCAGTCAGTGCTCGTTCCCCCACTGGAGCTGGAGAGCAACGTGTCCCTCTGGCTGTCTGCCGTCAGCCAGTACAAGGCCCGAGTTACCTTCTGTTCCTACTCAGTGATGGAAATGTGCACCAAGGGCCTGGGTGCTCAGACAGGCGCCCTTAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020231-'33-37,'33-36,34-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(7.6=100)
A:
PF0050123=AMP-binding=FE(9.1=100)
C2:
PF0050123=AMP-binding=FE(11.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTAGCATTTTCAGACCGC
R:
CCTAAGGGCGCCTGTCTGAG
Band lengths:
258-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: