MmuEX6049166 @ mm10
Exon Skipping
Gene
ENSMUSG00000020231 | Dip2a
Description
disco interacting protein 2 homolog A [Source:MGI Symbol;Acc:MGI:2385920]
Coordinates
chr10:76273035-76275098:-
Coord C1 exon
chr10:76274989-76275098
Coord A exon
chr10:76274149-76274279
Coord C2 exon
chr10:76273035-76273203
Length
131 bp
Sequences
Splice sites
3' ss Seq
CCTTTTCTTCACTCCTACAGATG
3' ss Score
10.92
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
ATGACATTCCAAAAAAGAAGGTGGCTAGCATTTTCAGACCGCCCTCCCCAGACGTGCTCGCGTACTTGGACTTCAGTGTGTCAACGACAGGGATCTTAGCTGGAGTTAAG
Seq A exon
ATGTCGCACGCAGCCACAAGTGCCTTGTGCCGTTCCATAAAGCTTCAGTGTGAGCTGTACCCCTCACGGCAGATCGCCATCTGCCTGGACCCTTACTGTGGCCTCGGGTTTGCACTGTGGTGTCTGTGCAG
Seq C2 exon
CGTCTACTCTGGGCACCAGTCAGTGCTCGTTCCCCCACTGGAGCTGGAGAGCAACGTGTCCCTCTGGCTGTCTGCCGTCAGCCAGTACAAGGCCCGAGTTACCTTCTGTTCCTACTCAGTGATGGAAATGTGCACCAAGGGCCTGGGTGCTCAGACAGGCGCCCTTAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020231-'46-55,'46-54,47-55
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(7.6=100)
A:
PF0050123=AMP-binding=FE(9.1=100)
C2:
PF0050123=AMP-binding=FE(11.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTAGCATTTTCAGACCGC
R:
CCTAAGGGCGCCTGTCTGAG
Band lengths:
258-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types