BtaEX6004250 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011495 | DIP2A
Description
DIP2 disco-interacting protein 2 homolog A (Drosophila) [Source:HGNC Symbol;Acc:HGNC:17217]
Coordinates
chr1:147883681-147891270:+
Coord C1 exon
chr1:147883681-147883800
Coord A exon
chr1:147888543-147888662
Coord C2 exon
chr1:147891043-147891270
Length
120 bp
Sequences
Splice sites
3' ss Seq
CTGCTGTTATTTCTGTGCAGATG
3' ss Score
9.67
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
GAGTAGACCCCTCCCTGCAAGTGGAGAATAGCATCCTTGGGCCCGCACAAGCCTCGGCCCCCGCGCCCAAGCAGCCCAAGCCGCGGCCCAGCAACGCCCGGGACGAGCGCTTCCGGTCAG
Seq A exon
ATGTTCACACCGAGGCCGTGCAGGCAGCTTTGGCCAAACACAAAGAGAGGAAGATGCCCATGCCATCCAAGAGGCGCTCTGTCCTCACGCACGCATCTGTGGAGGCCTACACACCCCCAG
Seq C2 exon
ACACGTCATCTGCCTCAGAAGATGAGGGCTCTTTACAGCGCCCCGGGCAACTGGCCTCCGCTCCGCTGCAGAGCCGCCCCAGCATCGAGCCCTGGCCTGACCCGGCCATTCAGGGCTCGTCCACCTCATCCTCCGCATCCTCCACCTCATCTCACCCGGGAGGGCAGCCTGCCGCCACGCCCAGTGCTGCCGCCGCGCTTGCCGGCCCCGCGGCCCTCGCCCGCGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011495-'2-4,'2-3,3-4=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.878 A=1.000 C2=0.870
Domain overlap (PFAM):
C1:
PF051207=GvpG=PD(0.1=0.0),PF064646=DMAP_binding=FE(34.8=100)
A:
PF064646=DMAP_binding=PD(24.3=68.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAATAGCATCCTTGGGCCC
R:
GGGTGAGATGAGGTGGAGGAT
Band lengths:
254-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]