RnoEX0027941 @ rn6
Exon Skipping
Gene
ENSRNOG00000043212 | Dip2a
Description
disco-interacting protein 2 homolog A [Source:RGD Symbol;Acc:1582897]
Coordinates
chr20:13067308-13074937:+
Coord C1 exon
chr20:13067308-13067347
Coord A exon
chr20:13073197-13073316
Coord C2 exon
chr20:13074731-13074937
Length
120 bp
Sequences
Splice sites
3' ss Seq
CTACTGTTGTTGCTGTGCAGATG
3' ss Score
8.7
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
AAGCCTCGGGCCAACTCGAGGGATGAGCGGTTCCGGTCAG
Seq A exon
ATGTTCACACGGAAGCCGTGCAGGCAGCTCTGGCCAAGTACAAGGAGAGGAAGATGCCCATGCCTTCAAAGAGACGGTCTGCCCTTGTGCACTCATCCGTGGAAACCTATACACCTCCAG
Seq C2 exon
ACACGTCATCTGCCTCAGAAGATGAGGGCTCTTTACGGCGACCTGGGCGACTCACCTCCACTCTGCTCCAGAGCCATTCCGGCATCGAGCCCTGGCTCGACAGGGTCATTCAGGGCTCGTCCACTTCATCCTCTGCATCAGGGAGACCTGCTGCTGCTCCCAGTGCCTCCACTGCGCTTGCAGGCCTCACGGCCCACGCCCACATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043212_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.897 C2=0.971
Domain overlap (PFAM):
C1:
PF064646=DMAP_binding=FE(11.7=100)
A:
PF064646=DMAP_binding=PD(25.2=68.3)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCGGGCCAACTCGAG
R:
CAAGCGCAGTGGAGGCAC
Band lengths:
218-338
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]