RnoEX0027942 @ rn6
Exon Skipping
Gene
ENSRNOG00000043212 | Dip2a
Description
disco-interacting protein 2 homolog A [Source:RGD Symbol;Acc:1582897]
Coordinates
chr20:13073197-13079224:+
Coord C1 exon
chr20:13073197-13073316
Coord A exon
chr20:13074731-13074937
Coord C2 exon
chr20:13079096-13079224
Length
207 bp
Sequences
Splice sites
3' ss Seq
CACCGTTATTTTAATCACAGACA
3' ss Score
5.43
5' ss Seq
TAGGTCAGT
5' ss Score
6.39
Exon sequences
Seq C1 exon
ATGTTCACACGGAAGCCGTGCAGGCAGCTCTGGCCAAGTACAAGGAGAGGAAGATGCCCATGCCTTCAAAGAGACGGTCTGCCCTTGTGCACTCATCCGTGGAAACCTATACACCTCCAG
Seq A exon
ACACGTCATCTGCCTCAGAAGATGAGGGCTCTTTACGGCGACCTGGGCGACTCACCTCCACTCTGCTCCAGAGCCATTCCGGCATCGAGCCCTGGCTCGACAGGGTCATTCAGGGCTCGTCCACTTCATCCTCTGCATCAGGGAGACCTGCTGCTGCTCCCAGTGCCTCCACTGCGCTTGCAGGCCTCACGGCCCACGCCCACATAG
Seq C2 exon
ATCCGCACTCCGCCCCACCCGATGTTACCACTGGGCTTGTGGAACACTCACACTTCGAGCGTCCACAGATGGCCTCTGTACGAGGTGTTCCTCGAGGGCACGGCAGGAACATGCTGGAGACCGCAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043212_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.897 A=0.971 C2=1.000
Domain overlap (PFAM):
C1:
PF064646=DMAP_binding=PD(25.2=68.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTCTGGCCAAGTACAAGG
R:
ATCTGCGGTCTCCAGCATGTT
Band lengths:
224-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]