BtaEX0011370 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011495 | DIP2A
Description
DIP2 disco-interacting protein 2 homolog A (Drosophila) [Source:HGNC Symbol;Acc:HGNC:17217]
Coordinates
chr1:147888543-147894698:+
Coord C1 exon
chr1:147888543-147888662
Coord A exon
chr1:147891043-147891270
Coord C2 exon
chr1:147894564-147894698
Length
228 bp
Sequences
Splice sites
3' ss Seq
CGTCGTTATTTTGACCACAGACA
3' ss Score
6.5
5' ss Seq
TAGGTCAGT
5' ss Score
6.39
Exon sequences
Seq C1 exon
ATGTTCACACCGAGGCCGTGCAGGCAGCTTTGGCCAAACACAAAGAGAGGAAGATGCCCATGCCATCCAAGAGGCGCTCTGTCCTCACGCACGCATCTGTGGAGGCCTACACACCCCCAG
Seq A exon
ACACGTCATCTGCCTCAGAAGATGAGGGCTCTTTACAGCGCCCCGGGCAACTGGCCTCCGCTCCGCTGCAGAGCCGCCCCAGCATCGAGCCCTGGCCTGACCCGGCCATTCAGGGCTCGTCCACCTCATCCTCCGCATCCTCCACCTCATCTCACCCGGGAGGGCAGCCTGCCGCCACGCCCAGTGCTGCCGCCGCGCTTGCCGGCCCCGCGGCCCTCGCCCGCGTAG
Seq C2 exon
ATCTGCACTCTGCCCCTCCTGATGTCACCACGGGCCTCGTGCAGCATCAGCACGCATACTGTGAGCGTCCGAAGCTGGCCTCCGTGAGAGGAGTCCCTCGGGGGTGCCGTGGGAGTGTCCTAGAGACGGCAGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011495_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.870 C2=0.577
Domain overlap (PFAM):
C1:
PF064646=DMAP_binding=PD(24.3=68.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTTCACACCGAGGCCGT
R:
CTGCCGTCTCTAGGACACTCC
Band lengths:
252-480
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development