HsaEX0019734 @ hg19
Exon Skipping
Gene
ENSG00000160305 | DIP2A
Description
DIP2 disco-interacting protein 2 homolog A (Drosophila) [Source:HGNC Symbol;Acc:17217]
Coordinates
chr21:47916901-47924402:+
Coord C1 exon
chr21:47916901-47917020
Coord A exon
chr21:47918495-47918746
Coord C2 exon
chr21:47924274-47924402
Length
252 bp
Sequences
Splice sites
3' ss Seq
CATCGTTATTTTAACCACAGACA
3' ss Score
6.65
5' ss Seq
TAGGTCAGT
5' ss Score
6.39
Exon sequences
Seq C1 exon
ATGTCCACACTGAAGCCGTGCAAGCAGCTTTGGCCAAATACAAAGAGAGGAAGATGCCTATGCCTTCGAAGAGACGTTCTGTCCTTGTGCATTCGTCTGTGGAAACCTACACCCCTCCAG
Seq A exon
ACACGTCGTCTGCCTCAGAAGATGAGGGCTCTTTACGGCGACCCGGGCGACTCACCTCCACTCCGCTCCAGAGCCATTCCAGCGTCGAGCCCTGGCTCGACCGGGTCATTCAGGGCTCGTCCACCTCATCCTCTGCATCCTCCACCTCATCTCACCCGGGAGGGAGACCCACCACTGCTCCCAGTGCTGCAGCCACGCCGGGGGCCGCCGCTACCACTGCACTCGCAGGCCTCGAGGCCCACACCCACATAG
Seq C2 exon
ATCTGCATTCTGCCCCTCCTGATGTCACCACGGGCCTCGTGGAGCATTCGTACTTTGAGCGTCCACAGGTGGCTTCTGTGAGAAGTGTTCCTCGGGGGTGCAGCGGGAGCATGCTGGAAACAGCAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160305_MULTIEX1-1/2=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.978 A=0.997 C2=0.989
Domain overlap (PFAM):
C1:
PF064646=DMAP_binding=PD(0.1=0.0),PF064646=DMAP_binding=PD(84.8=68.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTCCACACTGAAGCCGTG
R:
CTGTTTCCAGCATGCTCCCG
Band lengths:
243-495
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)