DreEX6034599 @ danRer10
Exon Skipping
Gene
ENSDARG00000078058 | dip2a
Description
DIP2 disco-interacting protein 2 homolog A [Source:ZFIN;Acc:ZDB-GENE-091204-2]
Coordinates
chr9:619571-628073:-
Coord C1 exon
chr9:627954-628073
Coord A exon
chr9:624761-625006
Coord C2 exon
chr9:619571-619702
Length
246 bp
Sequences
Splice sites
3' ss Seq
TGCTGTTGTTTTCCTGCCAGACA
3' ss Score
8.07
5' ss Seq
TCGGTCAGT
5' ss Score
7.03
Exon sequences
Seq C1 exon
ATCTTCATACAGAAGCAGTTCAAGCAGCTTTGGCCAAATATAAAGAGAGAAAGATGCCGATGCCCTCAAAGAGACGCTCTGTGCTGGTGCAGTCTTCAGTCGAAGCATGCACTCCTCCAG
Seq A exon
ACACGTCATCAGCTTCAGAGGATGAGGGCTCTCTGCGCCGGACAGGCCGCTTCGCCTCCTCATCCCCGTATGCTGCTCAGGCCAGCGTGGAGCACTGGTTTAACAGGGTGATCCAGGGCTCCTCCACGTCCTCCTCTGCCTCCTCCACCTCCTCACACCCTGGAGGACGAGCGCAGCACTGCACCAACACCAGCTCCGCTTCAGCCGCCACCGTCCTGGCAGACCTGATGGCACACACACACATCG
Seq C2 exon
ACCAGCACTGCGCACCGCCGGATGTGACGGGTCTGTTGGAGCGCTCGCTGCATGCGGAGCGCCCACAGGTGGCGTCAGTGCGAGGCCTTCCCCGCGGATACACACACTCCAGTCTGATGGAGACGGCCGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078058-'6-4,'6-3,7-4=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.878 A=0.775 C2=1.000
Domain overlap (PFAM):
C1:
PF064646=DMAP_binding=PD(24.3=68.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAAGCAGTTCAAGCAGCT
R:
CATCGGCCGTCTCCATCAGA
Band lengths:
244-490
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]