MmuEX0014700 @ mm10
Exon Skipping
Gene
ENSMUSG00000020231 | Dip2a
Description
disco interacting protein 2 homolog A [Source:MGI Symbol;Acc:MGI:2385920]
Coordinates
chr10:76313176-76319586:-
Coord C1 exon
chr10:76319467-76319586
Coord A exon
chr10:76317867-76318094
Coord C2 exon
chr10:76313176-76313304
Length
228 bp
Sequences
Splice sites
3' ss Seq
CATCATTATTTTAACCACAGACA
3' ss Score
6.08
5' ss Seq
TAGGTCAGT
5' ss Score
6.39
Exon sequences
Seq C1 exon
ATGTTCACACGGAAGCCGTGCAAGCAGCTTTGGCCAAGTACAAGGAGAGGAAGATGCCCATGCCTTCAAAGAGACGCTCCGCCCTTGTGCACTCCTCCGTTGAGACCTACACGCCTCCAG
Seq A exon
ACACGTCATCTGCCTCAGAAGATGAGGGCTCTTTACGGCGACCTGGGCGACTCACCTCCACTCTGCTCCAGAGCCATTCCGGCATCGAGCCCTGGCTCGACAGGGTCATTCAGGGCTCCTCCACTTCATCCTCTGCATCCTCCACCTCATCCCACCCGGGAGGGAGACCTGCTGCTGCTCCCAGTGCCTCCACTGCGCTCGCAGGCCTCACGGCCCACGCCCACATAG
Seq C2 exon
ATCTGCACTCTGCCCCACCGGATGTCACCACTGGGCTTGTGGAGCACTCATCCTACGAGCGTCCCCAGATGGCCTCTGTGCGAGGCATTCCTCGAGGGCACGGCAGGAACGTGCTGGAGACCGCGGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020231_CASSETTE8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.864 A=0.931 C2=1.000
Domain overlap (PFAM):
C1:
PF064646=DMAP_binding=PD(0.1=0.0),PF051207=GvpG=PD(14.8=19.5),PF064646=DMAP_binding=PD(84.8=68.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCCGTGCAAGCAGCTTT
R:
GTCTCCAGCACGTTCCTGC
Band lengths:
230-458
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types