GgaEX0008892 @ galGal3
Exon Skipping
Gene
ENSGALG00000006228 | DIP2A
Description
NA
Coordinates
chr7:6940434-6956384:-
Coord C1 exon
chr7:6956265-6956384
Coord A exon
chr7:6948781-6949026
Coord C2 exon
chr7:6940434-6940562
Length
246 bp
Sequences
Splice sites
3' ss Seq
CATCATTATTTTAATCACAGACA
3' ss Score
4.94
5' ss Seq
TAGGTTAGT
5' ss Score
5.5
Exon sequences
Seq C1 exon
ATGTCCACACTGAAGCAGTTCAGGCAGCTCTTGCAAAATACAAAGAGAGAAAAATGCCTATGCCTTCAAAGAGACGGTCTGTTCTTGTGCACTCTTCAGTAGAAACATACACACCTCCAG
Seq A exon
ACACATCGTCAGCATCAGAAGATGAGGGCTCGTTGCGTCGGCAAGGGCGGATCACCTCCACTCGGTTCCAGAGCCATTCCAACGTAGAGCCCTGGCTTAACCGGGTTATACAGGGCTCGTCCACCTCATCCTCTGCATCTTCCACCTCATCTCATCCAGGAGGGAAACCTGCTGCTGCTTCCAGTACTGCTACTGCCACCGCTGCTGCCACGGTGCTTGCAGATCTCATGGCACACATCCAGCTAG
Seq C2 exon
ATAACCACTCAGCACCTCCTGATGTAACCACTGGTCTGTTGGAACACTTGCATCATGAGCGTCCACAAGTAGCATCAGTACGAGGAATTCCCAAAGGCTACAACAGCAGCATTTTGGAAACTGGAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006228-'7-13,'7-9,8-13
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.816 C2=0.823
Domain overlap (PFAM):
C1:
PF064646=DMAP_binding=PD(41.2=68.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCCACACTGAAGCAGTTCA
R:
TCTCCAGTTTCCAAAATGCTGCT
Band lengths:
246-492
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]