GgaEX0008891 @ galGal3
Exon Skipping
Gene
ENSGALG00000006228 | DIP2A
Description
NA
Coordinates
chr7:6948781-6962216:-
Coord C1 exon
chr7:6962097-6962216
Coord A exon
chr7:6956265-6956384
Coord C2 exon
chr7:6948781-6949026
Length
120 bp
Sequences
Splice sites
3' ss Seq
TGTGTTTGTTTTCTATACAGATG
3' ss Score
10.28
5' ss Seq
CAGGTATCT
5' ss Score
7.33
Exon sequences
Seq C1 exon
GTGTGGATCCATCCCTGCAAGCAGAAAACAGAGTCCCAGGCACCTCACAAGCCACTGCTGTTGTGTCTAAACAGCAGAAATCGCATTCCACAAACTCAAGGGATGAGCGTTTCCGATCTG
Seq A exon
ATGTCCACACTGAAGCAGTTCAGGCAGCTCTTGCAAAATACAAAGAGAGAAAAATGCCTATGCCTTCAAAGAGACGGTCTGTTCTTGTGCACTCTTCAGTAGAAACATACACACCTCCAG
Seq C2 exon
ACACATCGTCAGCATCAGAAGATGAGGGCTCGTTGCGTCGGCAAGGGCGGATCACCTCCACTCGGTTCCAGAGCCATTCCAACGTAGAGCCCTGGCTTAACCGGGTTATACAGGGCTCGTCCACCTCATCCTCTGCATCTTCCACCTCATCTCATCCAGGAGGGAAACCTGCTGCTGCTTCCAGTACTGCTACTGCCACCGCTGCTGCCACGGTGCTTGCAGATCTCATGGCACACATCCAGCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006228-'6-9,'6-8,7-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.816
Domain overlap (PFAM):
C1:
PF064646=DMAP_binding=PU(57.4=97.5)
A:
PF064646=DMAP_binding=PD(41.2=68.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGGGATGAGCGTTTCCGAT
R:
ATGAGATCTGCAAGCACCGTG
Band lengths:
253-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]