DreEX6034598 @ danRer10
Exon Skipping
Gene
ENSDARG00000078058 | dip2a
Description
DIP2 disco-interacting protein 2 homolog A [Source:ZFIN;Acc:ZDB-GENE-091204-2]
Coordinates
chr9:624761-629526:-
Coord C1 exon
chr9:629407-629526
Coord A exon
chr9:627954-628073
Coord C2 exon
chr9:624761-625006
Length
120 bp
Sequences
Splice sites
3' ss Seq
GTGTGTTGCGTGTCTTGCAGATC
3' ss Score
11.28
5' ss Seq
CAGGTACAT
5' ss Score
7.79
Exon sequences
Seq C1 exon
GTGTAGATCCGTCTCTTCAGATCGATCACAGGATTCAGTCTTCAGCACCGGCGGCTCATCCGGCCTCCAAACACAACAAACCTCGGCTGGCCAACTCCAGGGATGAGCGCTTCAGATCAG
Seq A exon
ATCTTCATACAGAAGCAGTTCAAGCAGCTTTGGCCAAATATAAAGAGAGAAAGATGCCGATGCCCTCAAAGAGACGCTCTGTGCTGGTGCAGTCTTCAGTCGAAGCATGCACTCCTCCAG
Seq C2 exon
ACACGTCATCAGCTTCAGAGGATGAGGGCTCTCTGCGCCGGACAGGCCGCTTCGCCTCCTCATCCCCGTATGCTGCTCAGGCCAGCGTGGAGCACTGGTTTAACAGGGTGATCCAGGGCTCCTCCACGTCCTCCTCTGCCTCCTCCACCTCCTCACACCCTGGAGGACGAGCGCAGCACTGCACCAACACCAGCTCCGCTTCAGCCGCCACCGTCCTGGCAGACCTGATGGCACACACACACATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078058-'5-3,'5-2,6-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.902 A=0.878 C2=0.775
Domain overlap (PFAM):
C1:
PF064646=DMAP_binding=FE(34.8=100)
A:
PF064646=DMAP_binding=PD(24.3=68.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATTCAGTCTTCAGCACCGG
R:
GTGTGAGGAGGTGGAGGAGG
Band lengths:
248-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]