BtaEX6006047 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018986 | ACSL4
Description
acyl-CoA synthetase long-chain family member 4 [Source:HGNC Symbol;Acc:HGNC:3571]
Coordinates
chrX:62490497-62493710:-
Coord C1 exon
chrX:62493571-62493710
Coord A exon
chrX:62492406-62492578
Coord C2 exon
chrX:62490497-62490571
Length
173 bp
Sequences
Splice sites
3' ss Seq
TATTGCCCCTTTTTATCAAGGAT
3' ss Score
6.09
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GAAATCATGGATAGAATTTATAAGAATGTTATGAGCAAAGTCCAAGAGATGAATTATATTCAGAAAACTCTGTTCAAGATAGGGTATGATTACAAATTGGAACAGATTAAAAAGGGATATGATGCACCACTTTGCAATCT
Seq A exon
GATACTGTTTAAAAAAGTGAAGGCTCTGCTGGGAGGGAATGTCCGTATGATGCTGTCTGGTGGAGCACCCCTGTCTCCGCAGACACAGCGATTCATGAATGTCTGCTTCTGCTGCCCAGTTGGTCAGGGTTATGGATTAACAGAAACGTGTGGTGCTGGGACAGTTACTGAAG
Seq C2 exon
TTACTGACTATACCACTGGCAGAGTTGGGGCCCCTCTTATTTGCTGTGAAATTAAGCTAAAAGACTGGCAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018986-'9-12,'9-11,10-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(11.0=100)
A:
PF0050123=AMP-binding=FE(12.2=100)
C2:
PF0050123=AMP-binding=FE(5.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAATGTTATGAGCAAAGTCCAAGA
R:
CTTCCTGCCAGTCTTTTAGCT
Band lengths:
194-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]