MmuEX6046227 @ mm9
Exon Skipping
Gene
ENSMUSG00000031278 | Acsl4
Description
acyl-CoA synthetase long-chain family member 4 [Source:MGI Symbol;Acc:MGI:1354713]
Coordinates
chrX:138768213-138774632:-
Coord C1 exon
chrX:138774493-138774632
Coord A exon
chrX:138773427-138773599
Coord C2 exon
chrX:138768213-138768287
Length
173 bp
Sequences
Splice sites
3' ss Seq
TGTTCCCCCTTCTTTTCAAGGAT
3' ss Score
10.62
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GAAATCATGGATAGAATTTATAAGAATGTTATGAGCAAGGTTCAAGAGATGAATTATGTTCAGAAAACTCTATTTAAAATCGGGTATGATTACAAATTAGAGCAAATCAAGAAAGGCTATGACGCCCCTCTTTGTAATCT
Seq A exon
GATACTGTTTAAAAAGGTGAAGGCTCTGCTGGGAGGGAATGTCCGCATGATGCTGTCTGGCGGCGCGCCACTGTCCCCTCAGACACACCGATTCATGAATGTCTGCTTCTGCTGCCCCATTGGTCAGGGATATGGGCTGACAGAATCATGTGGTGCTGGAACAGTTACTGAAG
Seq C2 exon
TTACTGACTACACTACTGGAAGAGTTGGAGCTCCTCTTATTTGCTGTGAAATTAAACTGAAAGACTGGCAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031278-'11-14,'11-13,12-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(9.6=100)
A:
PF0050123=AMP-binding=FE(12.2=100)
C2:
PF0050123=AMP-binding=FE(5.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAATGTTATGAGCAAGGTTCAAGA
R:
CTTCCTGCCAGTCTTTCAGTT
Band lengths:
194-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: