GgaEX6033624 @ galGal3
Exon Skipping
Gene
ENSGALG00000008088 | ACSL4
Description
NA
Coordinates
chr4:13893337-13894831:+
Coord C1 exon
chr4:13893337-13893476
Coord A exon
chr4:13894400-13894572
Coord C2 exon
chr4:13894757-13894831
Length
173 bp
Sequences
Splice sites
3' ss Seq
ACATTTTTCCCTCTTTCCAGACT
3' ss Score
10.51
5' ss Seq
AAGGTAGTT
5' ss Score
6.44
Exon sequences
Seq C1 exon
GAAATAATGGACAGAATTTATAAAAATGTCATGAGTAAGGTTCAGGAGATGAACTATATTCAGAGAACTCTGTTCAAGATAGGCTATGACTACAAATTAGAACAAATCAAAAGAGGATACGATGCACCTCTGTGTAACAT
Seq A exon
ACTGTTGTTTAAAAAAGTAAAGGCACTACTAGGAGGGAACATCCGTATGATGCTTTCCGGAGGAGCCCCGCTCTCACCCCAAACACAAAGATTCATGAATATCTGTTTTTGCTGTCCTGTGGGCCAAGGCTATGGATTAACAGAAACATGCGGAGCTGGAACAATTACAGAAG
Seq C2 exon
TTGCTGATTATAGCACTGGAAGAGTTGGAGCTCCTCTTATTTGCTGTGAAATCAGATTGAGAGACTGGCAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008088-'12-12,'12-11,13-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(9.6=100)
A:
PF0050123=AMP-binding=FE(12.2=100)
C2:
PF0050123=AMP-binding=FE(5.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAATGTCATGAGTAAGGTTCAGGA
R:
CTTCTTGCCAGTCTCTCAATCTGA
Band lengths:
194-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]