BtaEX6006701 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016764 | UBA1
Description
Bos taurus ubiquitin-like modifier activating enzyme 1 (UBA1), mRNA. [Source:RefSeq mRNA;Acc:NM_001102477]
Coordinates
chrX:90846560-90848361:+
Coord C1 exon
chrX:90846560-90846749
Coord A exon
chrX:90847892-90847980
Coord C2 exon
chrX:90848269-90848361
Length
89 bp
Sequences
Splice sites
3' ss Seq
GTGTCCCTCTCTCCCTGCAGATG
3' ss Score
14.92
5' ss Seq
AAGGTGCTG
5' ss Score
4.05
Exon sequences
Seq C1 exon
CCCCTCCATCTGGACTACGTGATAGCTGCTGCCAACCTGTTCGCCCAGACCTACGGGCTGACAGGCTCTCAGGACCGAGCTGCTGTGGCCACACTCCTACAGTCTGTGCAGGTCCCCGAGTTCACCCCCAAGTCTGGAGTCAAGATCCATGTCTCTGACCAGGAGCTGCAGAGCGCCAATGCCTCTGTGG
Seq A exon
ATGACAGCCGTCTGGAAGAGCTCAAGGCTACACTGCCCAGTCCCGAAAAGCTCCCTGGGTTCAAGATGTACCCTATCGACTTTGAGAAG
Seq C2 exon
GATGATGACACCAACTTCCATATGGATTTCATCGTGGCCGCATCCAACCTCCGGGCAGAGAACTATGACATTCCCCCTGCAGACCGGCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016764-'39-30,'39-29,40-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.078 A=0.200 C2=0.032
Domain overlap (PFAM):
C1:
PF0213416=UBACT=PD(89.7=95.3)
A:
PF0213416=UBACT=PU(4.3=10.0)
C2:
PF0213416=UBACT=FE(43.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCACACTCCTACAGTCTG
R:
TGTCATAGTTCTCTGCCCGGA
Band lengths:
175-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]