RnoEX0095585 @ rn6
Exon Skipping
Gene
ENSRNOG00000019164 | Uba1
Description
ubiquitin-like modifier activating enzyme 1 [Source:RGD Symbol;Acc:1359327]
Coordinates
chrX:1724642-1726295:-
Coord C1 exon
chrX:1726106-1726295
Coord A exon
chrX:1724963-1725051
Coord C2 exon
chrX:1724642-1724734
Length
89 bp
Sequences
Splice sites
3' ss Seq
GTGTTTTCCTCTTTGTGCAGATG
3' ss Score
10.75
5' ss Seq
AAGGTGTTT
5' ss Score
2.06
Exon sequences
Seq C1 exon
ACATTGCATCTGGATTATGTGATGGCTGCTGCCAACCTTTTTGCCCAGACCTATGGGTTGACTGGCTCCCAAGACCGAGCTGCTGTGGCCTCACTCCTACAGTCAGTACAAGTTCCAGAGTTCACCCCCAAGTCTGGTGTCAAGATCCATGTTTCTGACCAGGAGTTGCAGAGCGCCAATGCCTCTGTTG
Seq A exon
ATGACAGCCGTCTCGAGGAGCTCAAAGCCACACTGCCGAGCCCAGACAAGTTACCTGGATTTAAGATGTACCCCATTGATTTTGAAAAG
Seq C2 exon
GACGATGACAGCAATTTCCACATGGATTTCATTGTGGCTGCATCTAATCTTCGGGCCGAAAACTATGATATTTCCCCTGCAGACCGGCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019164-'36-30,'36-29,37-30
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=0.167 C2=0.000
Domain overlap (PFAM):
C1:
PF0213416=UBACT=PD(89.7=95.3)
A:
PF0213416=UBACT=PU(4.3=10.0)
C2:
PF0213416=UBACT=FE(43.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTCCAGAGTTCACCCCCAA
R:
CCGGTCTGCAGGGGAAATATC
Band lengths:
167-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]