MmuEX6043817 @ mm9
Exon Skipping
Gene
ENSMUSG00000001924 | Uba1
Description
ubiquitin-like modifier activating enzyme 1 [Source:MGI Symbol;Acc:MGI:98890]
Coordinates
chrX:20256719-20258326:+
Coord C1 exon
chrX:20256719-20256908
Coord A exon
chrX:20257909-20257997
Coord C2 exon
chrX:20258234-20258326
Length
89 bp
Sequences
Splice sites
3' ss Seq
GTGTTTTTCTTTTTGTACAGATG
3' ss Score
9.97
5' ss Seq
AAGGTGCTT
5' ss Score
4.72
Exon sequences
Seq C1 exon
ACATTGCATCTGGATTATGTGATGGCTGCTGCCAACCTTTTTGCCCAGACCTATGGGTTGACTGGATCCCAAGACCGAGCTGCTGTGGCCTCACTCCTGCAGTCAGTACAAGTCCCAGAGTTCACCCCCAAGTCTGGTGTCAAGATTCATGTTTCTGACCAGGAGTTGCAGAGTGCCAATGCCTCTGTTG
Seq A exon
ATGACAGCCGTCTTGAGGAGCTCAAAGCCACATTGCCCAGCCCAGACAAGTTACCCGGATTTAAGATGTACCCCATTGATTTTGAGAAG
Seq C2 exon
GATGATGACAGCAATTTCCACATGGATTTCATTGTGGCTGCATCCAATCTTCGGGCCGAAAACTATGATATTTCCCCTGCAGACCGACACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001924-'34-29,'34-28,35-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=0.167 C2=0.000
Domain overlap (PFAM):
C1:
PF0213416=UBACT=PD(89.7=95.3)
A:
PF0213416=UBACT=PU(4.3=10.0)
C2:
PF0213416=UBACT=FE(43.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCACTCCTGCAGTCAGTA
R:
AGTTTTCGGCCCGAAGATTGG
Band lengths:
167-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: