DreEX0082634 @ danRer10
Exon Skipping
Gene
ENSDARG00000037559 | uba1
Description
ubiquitin-like modifier activating enzyme 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2009]
Coordinates
chr23:20732638-20734414:+
Coord C1 exon
chr23:20732638-20732827
Coord A exon
chr23:20733873-20733961
Coord C2 exon
chr23:20734223-20734414
Length
89 bp
Sequences
Splice sites
3' ss Seq
TGTTCTCTGCCTGTTTTCAGATG
3' ss Score
11.68
5' ss Seq
AAGGTACTA
5' ss Score
7.52
Exon sequences
Seq C1 exon
GATCTTCACATGGACTACATTTTGGCAGCAGCTAACTTGTATGCCCTGTCATACGGCCTGCCATCCTGCAATGACCGCTCAGCTCTGACCAAGCTTTTGCAGGATATTAAAGTGCCTGAGTTCACACCCAAGTCAGGAGTCAAGATTCACGTGTCTGATCAGGAGCTGCAGAGTGCCAACGCATCAGTCG
Seq A exon
ATGACTCGAGGCTCGAAGAGCTGAAGACACTGTTGCCTTCTTTAGAAGCATCTTCTCAATTCAAGCTCTGTCCTATTGAATTTGAAAAG
Seq C2 exon
AGCAAACTCATTGCTGGAAAAATCATTCCAGCCATTGCCACAACAACAGCCGCTGTTGTAGGTCTGGTGTGTCTGGAGTTGCTGAAGATCGTTCAGGGGCACAAGAAGCTCGAGTCCTACAAAAATGGCTTCATGAACCTTGCTCTGCCTTTCTTTGCCTTCTCCGAGCCTATAGCTGCCCCCAAGCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000037559_MULTIEX1-1/3=C1-3
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.047 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0213416=UBACT=PD(89.7=95.3)
A:
PF0213416=UBACT=PU(4.3=10.0)
C2:
PF0213416=UBACT=PD(47.8=51.6),PF093585=UBA_e1_C=PU(18.2=37.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAATGACCGCTCAGCTCTGAC
R:
TGTTGTGGCAATGGCTGGAAT
Band lengths:
167-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]