BtaEX6006711 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016764 | UBA1
Description
Bos taurus ubiquitin-like modifier activating enzyme 1 (UBA1), mRNA. [Source:RefSeq mRNA;Acc:NM_001102477]
Coordinates
chrX:90839349-90840034:+
Coord C1 exon
chrX:90839349-90839495
Coord A exon
chrX:90839627-90839803
Coord C2 exon
chrX:90839930-90840034
Length
177 bp
Sequences
Splice sites
3' ss Seq
GGTTCCTTTGGCCCCACTAGGAG
3' ss Score
5.34
5' ss Seq
AAGGTCAGC
5' ss Score
7.09
Exon sequences
Seq C1 exon
AAATCCTTGCCAGCCTCCCTAGCAGAGCCTGACTTTGTGATGACAGACTTCGCCAAGTATTCCCGCCCTGCCCAGCTACACATTGGCTTCCAGGCCCTGCACCATTTCTGTGCTCAGCATGGCCGGTCCCCTCGGCCCCACAATGAG
Seq A exon
GAGGATGCAGCAGAGCTGGTGACCATAGCCCAGGCTGTGAACGCTCGATCCCTGCCCGCAGTGCAGCAGGGCAGCCTGGATGAGGACCTCATCCGGAAGCTAGCATATGTGGCTGCTGGGGACCTGGCTCCCATAAATGCCTTCATTGGGGGCCTTGCTGCCCAGGAGGTCATGAAG
Seq C2 exon
GCTTGCTCTGGGAAGTTTATGCCCATCATGCAGTGGCTGTACTTTGATGCCCTTGAGTGTCTCCCTGAGGACAAAGAGGCCCTCACAGAGGACAAGTGCCTCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016764-'23-17,'23-16,24-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.163 A=0.034 C2=0.057
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATCCTTGCCAGCCTCCCTA
R:
GAGGCACTTGTCCTCTGTGAG
Band lengths:
249-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]