GgaEX6009818 @ galGal3
Exon Skipping
Gene
ENSGALG00000002521 | F1P543_CHICK
Description
NA
Coordinates
chr12:2269109-2269750:-
Coord C1 exon
chr12:2269604-2269750
Coord A exon
chr12:2269372-2269530
Coord C2 exon
chr12:2269109-2269216
Length
159 bp
Sequences
Splice sites
3' ss Seq
CATTGCCCCTCTGCCCGCAGGAG
3' ss Score
11.78
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GAGCCCCTCCGCCGGGCGCTGGCGATGCCCAGGATCCAGACCAGGAGCTCCACGGAGCTGCTGCGCAGCCGCACTCTGCACGCCGCCTTCTGGGCTCTGCACGCCTTCCGCCAGCAGCGGGGCCGCCTGCCCCAGCCCCGGGCACCT
Seq A exon
GAGGACGCTGAGCGTGTGCTGGAGCTGGCACGTGAGCTGGGCTCAGCGCTGGGCCCCCTGGATGAGGACGTCGTGCGGGCGTTCGCCAGCGTCAGCGCCGGGGAGCTGTGCCCGGTGGCGTCCTTCATGGGCGCGCTGGCTGCCCAGGAGGCGATGAAG
Seq C2 exon
GCCATCACGGGGAAGTTCCTGCCCCTGGAGCAGTGGTTTTACTTTGACGCCCTGGAGTGCCTGGCCGTGGAGGGGGCTGCGGGGCTGATGCCGGAGGACTGCGCCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002521-'7-10,'7-9,8-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.224 A=0.057 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF052378=MoeZ_MoeB=PU(52.5=58.5)
C2:
PF052378=MoeZ_MoeB=PD(44.1=72.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGCCCAGGATCCAGACCAG
R:
GCAGTCCTCCGGCATCAG
Band lengths:
226-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]