GgaEX6009818 @ galGal4
Exon Skipping
Gene
ENSGALG00000002521 | UBA7
Description
ubiquitin-like modifier activating enzyme 7 [Source:HGNC Symbol;Acc:HGNC:12471]
Coordinates
chr12:2432260-2432901:-
Coord C1 exon
chr12:2432755-2432901
Coord A exon
chr12:2432523-2432681
Coord C2 exon
chr12:2432260-2432367
Length
159 bp
Sequences
Splice sites
3' ss Seq
CATTGCCCCTCTGCCCGCAGGAG
3' ss Score
11.78
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GAGCCCCTCCGCCGGGCGCTGGCGATGCCCAGGATCCAGACCAGGAGCTCCACGGAGCTGCTGCGCAGCCGCACTCTGCACGCCGCCTTCTGGGCTCTGCACGCCTTCCGCCAGCAGCGGGGCCGCCTGCCCCAGCCCCGGGCACCT
Seq A exon
GAGGACGCTGAGCGTGTGCTGGAGCTGGCACGTGAGCTGGGCTCAGCGCTGGGCCCCCTGGATGAGGACGTCGTGCGGGCGTTCGCCAGCGTCAGCGCCGGGGAGCTGTGCCCGGTGGCGTCCTTCATGGGCGCGCTGGCTGCCCAGGAGGCGATGAAG
Seq C2 exon
GCCATCACGGGGAAGTTCCTGCCCCTGGAGCAGTGGTTTTACTTTGACGCCCTGGAGTGCCTGGCCGTGGAGGGGGCTGCGGGGCTGATGCCGGAGGACTGCGCCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002521-'13-15,'13-14,14-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.224 A=0.057 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF052378=MoeZ_MoeB=PU(52.5=58.5)
C2:
PF052378=MoeZ_MoeB=PD(44.1=72.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGCCCAGGATCCAGACCAG
R:
GCAGTCCTCCGGCATCAG
Band lengths:
226-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]