MmuEX6068770 @ mm9
Exon Skipping
Gene
ENSMUSG00000032596 | Uba7
Description
ubiquitin-like modifier activating enzyme 7 [Source:MGI Symbol;Acc:MGI:1349462]
Coordinates
chr9:107879660-107880647:+
Coord C1 exon
chr9:107879660-107879806
Coord A exon
chr9:107880183-107880353
Coord C2 exon
chr9:107880540-107880647
Length
171 bp
Sequences
Splice sites
3' ss Seq
GCCTGAGTGCCATCCCACAGGAT
3' ss Score
6.1
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
Exon sequences
Seq C1 exon
AAGCCCCTGGACATAGCTCTGCTTCAGCCCCATGTGGTGGCTCAGAATACTCAGGAAGTACAGCGTGCTCACTGCCTACATCAGGCCTTCCATGTACTGCACAAGTTCCAGCAACTTCATGGCCGGCTACCCAAGCCATGGGATCCT
Seq A exon
GATGATGCAGAGACTGTGGTGGAGCTGGCCCAGGACCTGGAGCCACTAAAAGGGACAGAAGAAGAGTCACTGGATGAGGCTCTCCTCCGCACAATTGCCCTGAGTAGTGCTGGTACCTTAAGCCCCATGGCAGCCATTATGGGAGGAGTGGCTGCTCAGGAGGTCCTAAAG
Seq C2 exon
GCCATCTCCAGGAAGTTCATGCCCCTGGATCAGTGGCTGTACTTTGACGCCCTTGAATGTCTTCCAGAAGATGAGACGCTCCTTCCCAGCCCTGAGGATTGTCAGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032596-'7-9,'7-8,8-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.041 A=0.193 C2=0.222
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACATAGCTCTGCTTCAGCC
R:
GACAATCCTCAGGGCTGGGAA
Band lengths:
242-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: