DreEX6080089 @ danRer10
Exon Skipping
Gene
ENSDARG00000037559 | uba1
Description
ubiquitin-like modifier activating enzyme 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2009]
Coordinates
chr23:20726567-20727904:+
Coord C1 exon
chr23:20726567-20726713
Coord A exon
chr23:20727515-20727691
Coord C2 exon
chr23:20727797-20727904
Length
177 bp
Sequences
Splice sites
3' ss Seq
CTCTGTCTGTCCTATTGCAGGCA
3' ss Score
11.29
5' ss Seq
AAGGTAATA
5' ss Score
8.49
Exon sequences
Seq C1 exon
AAATCCCTGTCCTCCTCCATGGCCGAACCAGAGTTCTTGCTGACTGATTTTGCCAAATTTGATCGTCCAGGCCAACTCCACGTGGGCTTTCAGGCACTGCATGCATTTGAGAAGAAGCACAGTCGTCTGCCAAAGCCCTGGAATCAG
Seq A exon
GCAGATGCGGATGAGCTTATGACTCTGGCTGAAGAGGTGAATGCTGCACAGACAGGATCTGCCAAGCAAGAGGAGCTGGACCAGGCAGTCATAAAAAAGCTGGCCTGCGTGGCTGCTGGAGACCTGGCACCCGTCAATGCCTTTATTGGTGGGCTTGCTGCCCAGGAGGTTATGAAG
Seq C2 exon
GCCTGCACAGGGAAGTTTATGCCCATCATGCAGTGGCTGTATTTTGATGCTTTGGAGTGCTTACCTGAGCCTGAGGAAGTCATTCTTACAGAGGAAGAGTGTGCTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000037559-'21-18,'21-16,22-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.041 A=0.017 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCCCTGTCCTCCTCCATGG
R:
AGGAGCACACTCTTCCTCTGT
Band lengths:
254-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]