BtaEX6095305 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012335 | UBA7
Description
Bos taurus ubiquitin-like modifier activating enzyme 7 (UBA7), mRNA. [Source:RefSeq mRNA;Acc:NM_001012284]
Coordinates
chr22:50993970-50995235:+
Coord C1 exon
chr22:50993970-50994113
Coord A exon
chr22:50994764-50994946
Coord C2 exon
chr22:50995128-50995235
Length
183 bp
Sequences
Splice sites
3' ss Seq
AACAGAATTCTACCCACTAGGTT
3' ss Score
3.59
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
Exon sequences
Seq C1 exon
GAACCCCTGGACACAGCCCTCCTTCAACCCCGTGTGGTGGCCCAGAGTGCCCAGAAAGTTCGTGCCCGCTGCCTGCATCAGTCCTTCCGCGCACTGCACAAGTTCCAGCAGCTCCATGGCCGCCCTCCCAAGCCTTGGGATCCT
Seq A exon
GTTGATGCAGAGATGGTGGTGGACCTGGCCCAGGCCATGGGACCACTGAAGGGGACAGAAGGAGAGCCTCTGGAAGAGCAGCTGGATGAGGCTCTGGTGCGGACAGTTGCCCTGAGCAGTGCTGGTGGCTTGAGCCCCATGGCAGCCGTGCTGGGTGCAGTGGCTGCCCAAGAAGTGCTGAAG
Seq C2 exon
GCGATCTCTGGCAAGTTTATGCCCCTGGACCAGTGGCTGTACTTCGATGCTCTGGATTGCCTTCCAGAAGATGGGGACCCCTTTCCCAACCCTGAGGACTGTGCACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012335-'11-14,'11-13,12-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=0.295 C2=0.306
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGACACAGCCCTCCTTCAA
R:
GTGCACAGTCCTCAGGGTTG
Band lengths:
244-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]