RnoEX6037553 @ rn6
Exon Skipping
Gene
ENSRNOG00000029195 | Uba7
Description
ubiquitin-like modifier activating enzyme 7 [Source:RGD Symbol;Acc:1308323]
Coordinates
chr8:116755979-116756947:+
Coord C1 exon
chr8:116755979-116756125
Coord A exon
chr8:116756483-116756653
Coord C2 exon
chr8:116756840-116756947
Length
171 bp
Sequences
Splice sites
3' ss Seq
ACCTGAGTGCCGTCCCACAGGAT
3' ss Score
7.51
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
Exon sequences
Seq C1 exon
AAGCCCCTGGACATAGCTCTGCTCCAGCCCTGCATGGTGGTCCAGAATACTCAGGAAATACAACGCGCTCACTGCCTACACCAGACCTTCCATGCACTGCACAAGTTCCAGCAACTTCATGGCCGGCTACCCAAGCCCTGGGATCCT
Seq A exon
GATGACGCAGAGACCGTGGTGTGGCTGGCCCAGGACCTAGAGCCACTAAAAGGGGCAAAAGAAGAGTCGCTGGATGAGGCTCTACTCCGGACAATTGCCCTGAGTAGTGCTGGTAGCTTAAGTCCCATGGCAGCCATTCTGGGAGGAGTGGCTGCCCAGGAAGTCCTGAAG
Seq C2 exon
GCAGTCTCCGGGAAGTTCATGCCCCTGGACCAGTGGCTGTACTTTGATGCCCTTGAATGTCTTCCAGAAGATGAGACGCTCCTGCCCAGTCCTGAGGACTGTCATCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029195-'9-14,'9-13,10-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.000 C2=0.139
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCCCCTGGACATAGCTCTG
R:
CCTCAGGACTGGGCAGGAG
Band lengths:
244-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]