BtaEX6008365 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000039803 | MYO7B
Description
myosin VIIB [Source:HGNC Symbol;Acc:HGNC:7607]
Coordinates
chr2:4884994-4888507:-
Coord C1 exon
chr2:4888386-4888507
Coord A exon
chr2:4887255-4887397
Coord C2 exon
chr2:4884994-4885107
Length
143 bp
Sequences
Splice sites
3' ss Seq
CATCATCCTCTGGCCCTTAGCCT
3' ss Score
5.35
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
TGGCGAGTCTGGGGCAGGGAAAACAGAGACCACCAAGCTCATCCTGCAGTTCCTGGCCACCATCAGCGGCCAGCATTCGTGGATTGAGCAGCAGGTCCTGGAAGCCAACCCCATCCTGGAAG
Seq A exon
CCTTTGGAAACGCCAAGACAATCCGAAACGACAACTCAAGCCGCTTCGGGAAGTACATTGACATCTACTTCAACGCCAGTGGGGTGATCGAGGGGGCGCGCATCGAGCAGTTTCTCCTGGAGAAATCCCGGGTCTGCCGGCAG
Seq C2 exon
GCCCCGGAGGAGCGGAACTACCACATCTTCTACTGCATGCTCCTGGGGATGAGCGCCGAGGAGAAGAAGCTGCTGTGCCTGGGGACGCCCTCGGAGTACCACTACCTCACCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039803-'7-6,'7-5,8-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.2=100)
A:
PF0006316=Myosin_head=FE(7.1=100)
C2:
PF0006316=Myosin_head=FE(5.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGGCAGGGAAAACAGAGA
R:
TGGTGAGGTAGTGGTACTCCG
Band lengths:
226-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]