MmuEX0030575 @ mm10
Exon Skipping
Gene
ENSMUSG00000024388 | Myo7b
Description
myosin VIIB [Source:MGI Symbol;Acc:MGI:107709]
Coordinates
chr18:32005431-32010173:-
Coord C1 exon
chr18:32010052-32010173
Coord A exon
chr18:32007001-32007143
Coord C2 exon
chr18:32005431-32005544
Length
143 bp
Sequences
Splice sites
3' ss Seq
AATCTCCCTTTTACCCTCAGCCT
3' ss Score
7.07
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
TGGCGAGTCTGGGGCCGGGAAGACCGAGACCACCAAGCTTATCCTTCAGTTCCTCGCCACGGTCAGTGGCCAGCATTCGTGGATCGAGCAACAGGTCCTGGAGGCCAACCCCATCCTGGAAG
Seq A exon
CCTTTGGCAATGCCAAGACCATCCGCAATGACAACTCCAGCCGCTTCGGGAAGTACATTGACATCCACTTCAATTCTAGTGGGGTGATTGAGGGCGCAAGCATTGAACACTTCCTCCTGGAGAAGTCCAGAGTCTGCCGGCAG
Seq C2 exon
GCTCCAGAGGAACGCAACTACCACATCTTCTACTGCATGCTGATGGGGATGAGCCCGGAAGAGAAGCAAATGCTGAGTCTGGGCATGCCCTCTGAGTACCATTACCTGACCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024388-'8-11,'8-9,9-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.131
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(22.2=100)
A:
PF0006316=Myosin_head=FE(25.4=100)
C2:
PF0006316=Myosin_head=FE(5.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTCTGGGGCCGGGAAG
R:
CAGGTAATGGTACTCAGAGGGC
Band lengths:
226-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types