DreEX0006144 @ danRer10
Exon Skipping
Gene
ENSDARG00000044441 | MYO7B (1 of 2)
Description
myosin VIIB [Source:HGNC Symbol;Acc:HGNC:7607]
Coordinates
chr6:28072427-28073238:+
Coord C1 exon
chr6:28072427-28072548
Coord A exon
chr6:28072880-28073022
Coord C2 exon
chr6:28073125-28073238
Length
143 bp
Sequences
Splice sites
3' ss Seq
CATAAATTTTTATTTTGCAGCCT
3' ss Score
8.29
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
TGGGGAGTCTGGAGCAGGGAAAACAGAGAGTACCAAACTCATGCTGCAGTTTCTTGCAGCCGTGAGTGGTCAGCGCTCCTGGATTGAGCAGCAAGTTCTAGAGGCCAACCCTATCTTAGAAG
Seq A exon
CCTTTGGTAATGCAAAAACCATCCGCAATGACAACTCCAGCCGCTTCGGAAAATACATCGACATCCACTTTAATAAAAGTGGAGCAATAGAGGGTGCTCGCATTGAACAGTACCTACTCGAAAAGTCACGTGTTTGCCGACAG
Seq C2 exon
GCATCGCAAGAGAGGAACTACCACATTTTTTACTGTATGCTCATGGGAATGCCTGCTGACCAAAAGAAGATCCTGTCTTTGGGAAATGCTGCAGAATACAACTATCTCACTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044441-'5-6,'5-5,6-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.0=100)
A:
PF0006316=Myosin_head=FE(6.9=100)
C2:
PF0006316=Myosin_head=FE(5.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGTCTGGAGCAGGGAAAA
R:
CATAGTGAGATAGTTGTATTCTGCAG
Band lengths:
234-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]