HsaEX6015457 @ hg19
Exon Skipping
Gene
ENSG00000169994 | MYO7B
Description
myosin VIIB [Source:HGNC Symbol;Acc:7607]
Coordinates
chr2:128327364-128334283:+
Coord C1 exon
chr2:128327364-128327485
Coord A exon
chr2:128331495-128331637
Coord C2 exon
chr2:128334170-128334283
Length
143 bp
Sequences
Splice sites
3' ss Seq
CATCGCCCGCTTACCTTCAGCCT
3' ss Score
6.14
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
CGGCGAGTCTGGGGCTGGCAAGACGGAGACCACCAAGCTCATCCTGCAGTTCCTGGCCACCATCAGTGGCCAGCATTCGTGGATTGAGCAGCAGGTCCTGGAAGCCAACCCCATCCTGGAGG
Seq A exon
CCTTTGGAAATGCCAAGACAATCCGCAACGACAACTCAAGCCGCTTTGGGAAGTACATTGACATCTACTTTAACCCCAGCGGGGTGATCGAGGGCGCGCGCATCGAGCAATTTCTCCTGGAGAAGTCCCGGGTCTGCCGGCAG
Seq C2 exon
GCTCCCGAGGAGCGGAACTACCATATCTTCTACTGCATGCTCATGGGGGTGAGTGCTGAGGACAAGCAGCTGCTGAGCCTGGGCACGCCCTCCGAGTACCACTACCTGACCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169994-'5-7,'5-6,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.0=100)
A:
PF0006316=Myosin_head=FE(6.9=100)
C2:
PF0006316=Myosin_head=FE(5.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTCTGGGGCTGGCAAGA
R:
CAGGTAGTGGTACTCGGAGGG
Band lengths:
226-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)