BtaEX6008388 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000039803 | MYO7B
Description
myosin VIIB [Source:HGNC Symbol;Acc:HGNC:7607]
Coordinates
chr2:4827045-4829405:-
Coord C1 exon
chr2:4829227-4829405
Coord A exon
chr2:4828090-4828271
Coord C2 exon
chr2:4827045-4827175
Length
182 bp
Sequences
Splice sites
3' ss Seq
GTGTGTCCATGTGACTGTAGAGG
3' ss Score
4.66
5' ss Seq
CTGGTAACT
5' ss Score
5.45
Exon sequences
Seq C1 exon
GGAGGCCCGGGGTGGGCAGAGGCTGATGCTGTCCACGCTGCACGAAGAGGAGTATGAGTTCCGGTCCCCCAGCAGTGTGGCCGTCGCCGAGCTGGTGGCCATGTTTCTGGAGGGCTTGAAGGAGAGGTCCGTGTTCGCCATGGCCCTGCAGGACAGGAAGGCCACAGGTACCCAGCCAG
Seq A exon
AGGATTCCACCCTCCTGCCCTTCAAGAAGGGGGACTTGCTGATCTTGACAAAGAAGCAGGGGCTGCTGGCCTCTGAGAACTGGACCCTGGCCCAGAATGACCGGACCGAGAAGACGGGACTGGTGCCTACCTCCTGCCTCTACACCATCCCGACAGTCACCAAGCCCTCAGCACAGCTGCTG
Seq C2 exon
AGCTTGCTGGCCATGTCACCGGAGAAGCGGAAGCTGGCGGCCCAGGAGGGGAGGCCCACAGAGGCTCCCCCCGAGGAGCAGCCCGAGGAGAACCTGCACACCCTGGAGGAATTCTCCTATGAATTTTTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039803-'44-46,'44-45,45-46=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.131 A=0.164 C2=0.500
Domain overlap (PFAM):
C1:
PF146041=SH3_9=PU(4.0=3.3)
A:
PF146041=SH3_9=PD(94.0=77.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGTATGAGTTCCGGTCCC
R:
GAATTCCTCCAGGGTGTGCAG
Band lengths:
246-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]