MmuEX6000750 @ mm9
Exon Skipping
Gene
ENSMUSG00000024388 | Myo7b
Description
myosin VIIB [Source:MGI Symbol;Acc:MGI:107709]
Coordinates
chr18:32126784-32129254:-
Coord C1 exon
chr18:32129091-32129254
Coord A exon
chr18:32127576-32127757
Coord C2 exon
chr18:32126784-32126914
Length
182 bp
Sequences
Splice sites
3' ss Seq
TATGTAACCTGGACCTGCAGACG
3' ss Score
4.98
5' ss Seq
CTGGTATGT
5' ss Score
8.14
Exon sequences
Seq C1 exon
GGACGCCCCAGGAGGGAAGAAGCTGCTTCTCGCCACACTCCAGGAAGAGTACGAGTTCGTCTCCCCCAGCAGCGTGGCTATTGCAGAGATGGTGGCCTTGTTCTTGGGAGGCTTGAAGGAGAGATCTGTGTTCGCCATGGCCCTGCAGGACAGAAGGGCCACAG
Seq A exon
ACGATATCACCCTTCTGCCCTTCAAGAAAGGTGACTTACTGATCCTGACCAAGAAACAAGGACTGTTGGCCTCAGAGAACTGGGCTCTGGGTCAGAATGACAGAACTGGCAAGACAGGGCTGGTGCCTACTGCCTGTCTCTACACCATCCCCTCGGTCACCAAGCCCTCAACCCAGCTGCTG
Seq C2 exon
AGCTTGCTGGCCATGTCACCAGAGAAACGGAAGCTGGCAGCCCAGGAGGTGCGGGCTCTGGAGCCACCACTGGAGGATCAGCTCACAGAGTCGCCATACACCCTGGAGGAATTCTCCTACCAGTTCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024388-'32-34,'32-33,33-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.016 C2=0.091
Domain overlap (PFAM):
C1:
PF146041=SH3_9=PU(14.3=14.3)
A:
PF146041=SH3_9=PD(83.9=77.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGAGGGAAGAAGCTGCTTC
R:
TATGGCGACTCTGTGAGCTGA
Band lengths:
254-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: