DreEX6022044 @ danRer10
Exon Skipping
Gene
ENSDARG00000044441 | MYO7B (1 of 2)
Description
myosin VIIB [Source:HGNC Symbol;Acc:HGNC:7607]
Coordinates
chr6:28102397-28104303:+
Coord C1 exon
chr6:28102397-28102551
Coord A exon
chr6:28102668-28102849
Coord C2 exon
chr6:28104185-28104303
Length
182 bp
Sequences
Splice sites
3' ss Seq
TTATTTATTTTTTTCCCCAGACG
3' ss Score
10.67
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
Exon sequences
Seq C1 exon
AGAAAGGAAGTGTGTTTGTTTGCTGACTCTGAAAGGAGACTTCACACTGAATGCAATCATGGCTGTAGAAATCTCTGATCTGGTAGCCATGTTTCTGGCAGGCCTCATACAACGTTCACAATATGCAGTGGCCCTACAGGAGGTCAACAGACAAG
Seq A exon
ACGATAGAACAATTCTGAGCTTTAAGAAAGCCGAGCTCATCTACCTTATCAAGGATGAAGAGTTTTCTGCAGCCCGTGGCTGGTTGAAGGGGAAAAATGAGCGGACTGGGGAAATCGGTGCAATCCCTGCAGATGCTGTATTGATTCTTCCAACTCTTACAAAACCGACCAATGAAGTTCTG
Seq C2 exon
AGCCTCATCAGCTTGTCACCAGATCAGAGAAAGACCATCATAGACAACACTTCAAAGGGAACCCTTACTGAAAGAGTGGCTCCTTCAACTCTAAAAGAGTTCTCCGTTGAATATTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044441-'33-36,'33-35,34-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.200
Domain overlap (PFAM):
C1:
PF0037313=FERM_M=FE(10.9=100),PF0765312=SH3_2=PU(18.0=20.8)
A:
PF0037313=FERM_M=FE(12.6=100),PF0765312=SH3_2=PD(80.3=80.3)
C2:
PF0037313=FERM_M=FE(8.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGTGTGTTTGTTTGCTGACT
R:
AGAGTTGAAGGAGCCACTCTT
Band lengths:
242-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]