MmuEX6000750 @ mm10
Exon Skipping
Gene
ENSMUSG00000024388 | Myo7b
Description
myosin VIIB [Source:MGI Symbol;Acc:MGI:107709]
Coordinates
chr18:31967130-31969600:-
Coord C1 exon
chr18:31969437-31969600
Coord A exon
chr18:31967922-31968077
Coord C2 exon
chr18:31967130-31967260
Length
156 bp
Sequences
Splice sites
3' ss Seq
TCACCCTTCTGCCCTTCAAGAAA
3' ss Score
6.44
5' ss Seq
CTGGTATGT
5' ss Score
8.14
Exon sequences
Seq C1 exon
GGACGCCCCAGGAGGGAAGAAGCTGCTTCTCGCCACACTCCAGGAAGAGTACGAGTTCGTCTCCCCCAGCAGCGTGGCTATTGCAGAGATGGTGGCCTTGTTCTTGGGAGGCTTGAAGGAGAGATCTGTGTTCGCCATGGCCCTGCAGGACAGAAGGGCCACAG
Seq A exon
AAAGGTGACTTACTGATCCTGACCAAGAAACAAGGACTGTTGGCCTCAGAGAACTGGGCTCTGGGTCAGAATGACAGAACTGGCAAGACAGGGCTGGTGCCTACTGCCTGTCTCTACACCATCCCCTCGGTCACCAAGCCCTCAACCCAGCTGCTG
Seq C2 exon
AGCTTGCTGGCCATGTCACCAGAGAAACGGAAGCTGGCAGCCCAGGAGGTGCGGGCTCTGGAGCCACCACTGGAGGATCAGCTCACAGAGTCGCCATACACCCTGGAGGAATTCTCCTACCAGTTCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024388-'44-51,'44-50,45-51
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.016 C2=0.091
Domain overlap (PFAM):
C1:
PF146041=SH3_9=PU(14.3=14.3)
A:
PF146041=SH3_9=PD(83.9=77.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGAGGGAAGAAGCTGCTTC
R:
TATGGCGACTCTGTGAGCTGA
Band lengths:
254-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types