RnoEX6058348 @ rn6
Exon Skipping
Gene
ENSRNOG00000015035 | Myo7b
Description
myosin VIIb [Source:RGD Symbol;Acc:1561153]
Coordinates
chr18:24754236-24756603:-
Coord C1 exon
chr18:24756440-24756603
Coord A exon
chr18:24754963-24755144
Coord C2 exon
chr18:24754236-24754366
Length
182 bp
Sequences
Splice sites
3' ss Seq
TATGTGACCTGGACCTGCAGATG
3' ss Score
7.37
5' ss Seq
CTGGTATGT
5' ss Score
8.14
Exon sequences
Seq C1 exon
GGACGCCCCAGGTGGGAAGAGTCTGCTTCTGTCCACACTGCATGAAGAGTACGAGTTCGCCTCCCCCAGCAGCGTGGCCATTGCAGAGATGGTGGCCTTGTTCCTGGCAGGCTTGAAGGAGAGATCTGTGTTCGCCATGGCCCTGCAGGACAGGAAGGCCACAG
Seq A exon
ATGATGTCACCCTTCTGCCCTTCAAGAAAGGGGACTTACTGATCCTGACCAAGAAACAGGGACTGTTGGCCTCAGAGAACTGGGTCCTGGGCCAGAACGACAGAACCGGCAAGACAGGACTGGTGCCCACGGCCTGCCTCTACACCATCCCCTCAGTCACCAAGCCCTCAGCCCAGCTGCTG
Seq C2 exon
AACTTGCTGGCCATGTCGCCAGAGAAACGGAAGCTGGCAGCCCAGGAGGTGCAGGCTTCGGAGCCACCGCTAGAGGAGCAGCTCACAGAGTTACCGTACACCCTGGAGGAGTTCTCCTACCAGTATTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015035-'43-54,'43-53,44-54=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.250
Domain overlap (PFAM):
C1:
PF146041=SH3_9=PU(14.3=14.3)
A:
PF146041=SH3_9=PD(83.9=77.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTTCTGTCCACACTGCAT
R:
CCTCCAGGGTGTACGGTAACT
Band lengths:
251-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]