BtaEX6008875 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014405 | OSBPL6
Description
oxysterol binding protein-like 6 [Source:HGNC Symbol;Acc:HGNC:16388]
Coordinates
chr2:18537861-18564896:-
Coord C1 exon
chr2:18564795-18564896
Coord A exon
chr2:18543513-18543605
Coord C2 exon
chr2:18537861-18537983
Length
93 bp
Sequences
Splice sites
3' ss Seq
GTATTTCCGTGTATTTTCAGAGC
3' ss Score
8.79
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
ATGAGTTCAGACGAGAAGGGCATATCCCCTGCTCACAAAACATCCACCCCCACCCATAGAAGTGCCTCCTCTTCGACGTCCTCCCAGAGGGACAGTAGGCAG
Seq A exon
AGCATCCACATACTGGAGAGGACTTCTTCCACGAGCACCGAACCCTCTGTAAGTCGGCAACTGCTGGAACCAGAGCCGGTGCCCCTCTCTAAG
Seq C2 exon
GAAGCTGACAGCTGGGAAATTATAGAAGGACTGAAAATAGGCCAAACCAATGTCCAGAGACCAGACAAACATGAAGGTTTTATGCTAAAGAAGAGAAAATGGCCTTTAAAAGGCTGGCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014405-'5-3,'5-2,6-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.839 C2=0.220
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF154091=PH_8=PU(16.7=36.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGTTCAGACGAGAAGGGCA
R:
TGTCTGGTCTCTGGACATTGGT
Band lengths:
168-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]