GgaEX0013490 @ galGal3
Exon Skipping
Gene
ENSGALG00000009172 | E1BQU1_CHICK
Description
NA
Coordinates
chr7:16561890-16575097:-
Coord C1 exon
chr7:16574862-16575097
Coord A exon
chr7:16564709-16564804
Coord C2 exon
chr7:16561890-16562012
Length
96 bp
Sequences
Splice sites
3' ss Seq
GGGTTGTTTGTTTTTTTTAGAGC
3' ss Score
8.71
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GTGAAGTTCAGCTGAGTTTGAAGTCTTTTGGAGGTCCGTAAACTGTGAAACAGAAGAATGCAGAAGAGTATCCCTTGCATTTTTGTACATGAGTGACAAGAGCACAAAATCGTTACTGCTAGTGTGCTGCGAAGATGAGTTCGGAGGAGAAGAGTATATCTCCTGCTCACAAAACTTCCACACCATCACATAGAAGTGCCTCCTCTTCATCATCATCTCAGAGGGATAGGAGGCAG
Seq A exon
AGCGTTAATCTTTTGGAACGGAAGGCTTCGTCAGGAAGCACAGACCCTTCCTTAAGCAAGCAGTTCCTGGAAGCAGACCCTATCTCTCTGTCCAAG
Seq C2 exon
GAGCCTGACAGCTGGGAAATCATAGAGGGTCTGAAAATTGGCCAGACCAATGTACAGAAGCCAGACAAACATGAAGGCTTCATGCTGAAAAAGAGAAAATGGCCCTTAAAAGGTTGGCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009172-'9-8,'9-6,10-8
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=1.000 A=0.594 C2=0.220
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF154091=PH_8=PU(16.7=36.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTAGTGTGCTGCGAAGATG
R:
GTCTGGCCAATTTTCAGACCCT
Band lengths:
167-263
Functional annotations
There are 0 annotated functions for this event