GgaEX0013490 @ galGal4
Exon Skipping
Gene
ENSGALG00000009172 | OSBPL6
Description
oxysterol binding protein-like 6 [Source:HGNC Symbol;Acc:HGNC:16388]
Coordinates
chr7:14964461-14977668:-
Coord C1 exon
chr7:14977433-14977668
Coord A exon
chr7:14967280-14967375
Coord C2 exon
chr7:14964461-14964586
Length
96 bp
Sequences
Splice sites
3' ss Seq
GGGTTGTTTGTTTTTTTTAGAGC
3' ss Score
8.71
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GTGAAGTTCAGCTGAGTTTGAAGTCTTTTGGAGGTCCGTAAACTGTGAAACAGAAGAATGCAGAAGAGTATCCCTTGCATTTTTGTACATGAGTGACAAGAGCACAAAATCGTTACTGCTAGTGTGCTGCGAAGATGAGTTCGGAGGAGAAGAGTATATCTCCTGCTCACAAAACTTCCACACCATCACATAGAAGTGCCTCCTCTTCATCATCATCTCAGAGGGATAGGAGGCAG
Seq A exon
AGCGTTAATCTTTTGGAACGGAAGGCTTCGTCAGGAAGCACAGACCCTTCCTTAAGCAAGCAGTTCCTGGAAGCAGACCCTATCTCTCTGTCCAAG
Seq C2 exon
CAGGAGCCTGACAGCTGGGAAATCATAGAGGGTCTGAAAATTGGCCAGACCAATGTACAGAAGCCAGACAAACATGAAGGCTTCATGCTGAAAAAGAGAAAATGGCCCTTAAAAGGTTGGCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009172-'2-8,'2-7,4-8=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=1.000 A=0.656 C2=0.214
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF154091=PH_8=PU(16.7=35.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTAGTGTGCTGCGAAGATG
R:
GTCTGGCCAATTTTCAGACCCT
Band lengths:
170-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]