RnoEX0062525 @ rn6
Exon Skipping
Gene
ENSRNOG00000010812 | Osbpl6
Description
oxysterol binding protein-like 6 [Source:RGD Symbol;Acc:1308887]
Coordinates
chr3:63379037-63400815:+
Coord C1 exon
chr3:63379037-63379292
Coord A exon
chr3:63394442-63394534
Coord C2 exon
chr3:63400693-63400815
Length
93 bp
Sequences
Splice sites
3' ss Seq
GGGTTTCTGATCATTTGCAGAGC
3' ss Score
7.63
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
GAAGTTTGGACACATCATCAGTGGCCAGAGCTTTCCGAGTCTCGTCCGATCCGAGGGAGATGGACTGAAGCCACAGACTGTCTGGTTCTTTGTCTGGGAGTTGGAAGGAGGATTGGGATGGTCTCACGTGCACATCCCTAGACTAATTGCAACCATGAGTTCAGACGAGAAGGGCATATCCCCTGCTCATAAAACATCCACTCCGACCCACAGAAGTGCCTTGTCGTCAACATCTTCTCAGAGGGAAAGCAGACAG
Seq A exon
AGCATCCACGTTCTGGAGAGAACTGCTTCATCCAGCACGGAGCCCTCCATCAGTCGGCAGCTGCTAGAGCCGGAGCCCATCCCCCTCTCCAAG
Seq C2 exon
GAAGCTGACAGCTGGGAAATTATAGAAGGGCTGAAAATAGGCCAAACCAATGTCCAGAAACCAGACAGGCACGAGGGATTTATGCTGAAGAAGAGAAAATGGCCTTTAAAGGGCTGGCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010812-'9-10,'9-8,11-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.800 C2=0.220
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF154091=PH_8=PU(16.7=36.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGTTCAGACGAGAAGGGCA
R:
GTGCCTGTCTGGTTTCTGGAC
Band lengths:
173-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]