BtaEX6008900 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016396 | PDE11A
Description
Bos taurus phosphodiesterase 11A (PDE11A), mRNA. [Source:RefSeq mRNA;Acc:NM_001205422]
Coordinates
chr2:19201639-19214480:+
Coord C1 exon
chr2:19201639-19201702
Coord A exon
chr2:19208852-19208926
Coord C2 exon
chr2:19214397-19214480
Length
75 bp
Sequences
Splice sites
3' ss Seq
AAAATGTTTTTGTGTTTCAGGTG
3' ss Score
10.95
5' ss Seq
TCAGTAAGA
5' ss Score
5.52
Exon sequences
Seq C1 exon
ATCAATGTTAATGACAGCCTGTGACCTTGGAGCCGTGACCAAACCGTGGGAGATCTCGAGACAG
Seq A exon
GTGGCTGAACTTGTAACCAGCGAGTTCTTTGAACAAGGCGATCGGGAGAGAGCAGAACTGAAACTCACCCCTTCA
Seq C2 exon
GCTATTTTTGATCGGAACCGGAAGGATGAGCTGCCTCGGTTGCAACTGGAGTGGATTGATAGCATCTGTATGCCTTTGTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016396-'21-20,'21-19,22-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=FE(8.8=100)
A:
PF0023314=PDEase_I=FE(10.0=100)
C2:
PF0023314=PDEase_I=FE(11.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAATGTTAATGACAGCCTGTGAC
R:
CATACAGATGCTATCAATCCACTCCA
Band lengths:
135-210
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]