GgaEX6042224 @ galGal3
Exon Skipping
Gene
ENSGALG00000009215 | PDE11A
Description
NA
Coordinates
chr7:16759131-16764390:+
Coord C1 exon
chr7:16759131-16759194
Coord A exon
chr7:16762284-16762358
Coord C2 exon
chr7:16764307-16764390
Length
75 bp
Sequences
Splice sites
3' ss Seq
ATCATGATTTGTATTTTTAGGCA
3' ss Score
7.53
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
ATCAATGCTAATGACAGCCTGTGACCTTGGAGCTGTGACCAAACCGTGGGAGATTTCAAGACAG
Seq A exon
GCAGCTGAGCTGGTAACCAGTGAGTTCTTTGAACAAGGAGACAGAGAAAGATCTGAACTGAAACTCATCCCTTCA
Seq C2 exon
GCCATTTTTGATCGGAACAGGAAAGATGAACTACCCAGGTTGCAGCTCGAGTGGATTGATAGCATCTGCATGCCATTGTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009215-'18-20,'18-19,19-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=FE(8.8=100)
A:
PF0023314=PDEase_I=FE(10.0=100)
C2:
PF0023314=PDEase_I=FE(11.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTAATGACAGCCTGTGACC
R:
CTCATACAATGGCATGCAGATG
Band lengths:
143-218
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]