MmuEX6102256 @ mm10
Exon Skipping
Gene
ENSMUSG00000075270 | Pde11a
Description
phosphodiesterase 11A [Source:MGI Symbol;Acc:MGI:3036251]
Coordinates
chr2:76017836-76029340:-
Coord C1 exon
chr2:76029277-76029340
Coord A exon
chr2:76022711-76022785
Coord C2 exon
chr2:76017836-76017919
Length
75 bp
Sequences
Splice sites
3' ss Seq
CAAATGCTTCTGTGTTTCAGGTG
3' ss Score
9.55
5' ss Seq
TCTGTAAGC
5' ss Score
4.33
Exon sequences
Seq C1 exon
ATCAATGTTAATGACAGCCTGTGACCTTGGAGCCGTGACCAAACCGTGGGAGATCTCCAGACAG
Seq A exon
GTGGCTGAACTTGTAACCAGCGAGTTCTTTGAACAAGGAGATCGGGAGAGGTCGGAACTCAAGCTCACTCCCTCT
Seq C2 exon
GCTATTTTTGACCGGAACCGGAAAGATGAACTGCCTCGGTTGCAGCTGGAGTGGATTGATAGCATCTGCATGCCTTTGTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000075270-'25-25,'25-24,27-25=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=FE(12.1=100)
A:
PF0023314=PDEase_I=FE(10.0=100)
C2:
PF0023314=PDEase_I=FE(11.2=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTAATGACAGCCTGTGACCT
R:
CTGATACAAAGGCATGCAGATG
Band lengths:
143-218
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types