DreEX6040564 @ danRer10
Exon Skipping
Gene
ENSDARG00000006151 | pde11al
Description
phosphodiesterase 11a, like [Source:ZFIN;Acc:ZDB-GENE-031118-106]
Coordinates
chr16:21339419-21340551:-
Coord C1 exon
chr16:21340488-21340551
Coord A exon
chr16:21339596-21339670
Coord C2 exon
chr16:21339419-21339502
Length
75 bp
Sequences
Splice sites
3' ss Seq
ACCTATGTTTCTATCTCTAGGTG
3' ss Score
12.97
5' ss Seq
GCTGTATGT
5' ss Score
5.1
Exon sequences
Seq C1 exon
GTCTATGCTGATGACGGCGTGTGACTTGGGTGCAGTGACTCGACCATGGGAGATCTCAAAACAG
Seq A exon
GTGGCTGAACTGGTGACCAGTGAATTCTTTGAACAAGGTGACAGGGAGAGATCGGAGCTGAAGCTGACACCAGCT
Seq C2 exon
GCCATTTTTGATCGCAATCGTAAAGATGAGCTTCCTGTGCTTCAGCTGGAATGGATTGATGGAATCTGTAAGCCATTATATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000006151-'19-24,'19-23,20-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=FE(10.8=100)
A:
PF0023314=PDEase_I=FE(10.0=100)
C2:
PF0023314=PDEase_I=FE(11.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGATGACGGCGTGTGACTTG
R:
TAATGGCTTACAGATTCCATCAATCC
Band lengths:
135-210
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]