RnoEX0064208 @ rn6
Exon Skipping
Gene
ENSRNOG00000024457 | Pde11a
Description
phosphodiesterase 11A [Source:RGD Symbol;Acc:621793]
Coordinates
chr3:62845336-62857235:-
Coord C1 exon
chr3:62857172-62857235
Coord A exon
chr3:62850382-62850456
Coord C2 exon
chr3:62845336-62845419
Length
75 bp
Sequences
Splice sites
3' ss Seq
CAAACGCTTCTGTGTTTCAGGTG
3' ss Score
9.34
5' ss Seq
TCTGTAAGC
5' ss Score
4.33
Exon sequences
Seq C1 exon
ATCAATGTTAATGACAGCTTGTGACCTTGGAGCCGTGACCAAACCGTGGGAGATCTCCAGACAG
Seq A exon
GTGGCTGAACTTGTCACCAGCGAGTTCTTCGAACAAGGAGATCGGGAGAGGTCGGAACTCAAGCTCACCCCCTCT
Seq C2 exon
GCTATTTTTGACCGGAACCGGAAAGATGAGCTGCCTCGGCTGCAACTGGAGTGGATTGACAGCATCTGCATGCCTTTGTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024457-'33-35,'33-34,34-35
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=FE(8.8=100)
A:
PF0023314=PDEase_I=FE(10.0=100)
C2:
PF0023314=PDEase_I=FE(11.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTAATGACAGCTTGTGACCT
R:
CTGATACAAAGGCATGCAGATG
Band lengths:
143-218
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]